STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR28932.1COG3313 Predicted Fe-S protein. (65 aa)    
Predicted Functional Partners:
EAR28933.1
Probable sensor histidine kinase protein; COG0642 Signal transduction histidine kinase.
       0.801
EAR26472.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.632
EAR27316.1
COG1846 Transcriptional regulators.
  
     0.627
EAR30673.1
Hypothetical protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
     0.537
EAR28934.1
COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain.
       0.514
EAR28801.1
Hypothetical protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
     0.488
EAR30094.1
Hypothetical protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
     0.477
EAR27907.1
COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
     0.452
EAR26385.1
COG0840 Methyl-accepting chemotaxis protein.
  
     0.451
ColA
Microbial collagenase.
  
     0.427
Your Current Organism:
Pseudoalteromonas tunicata
NCBI taxonomy Id: 87626
Other names: P. tunicata D2, Pseudoalteromonas sp. D2, Pseudoalteromonas tunicata D2, Pseudoalteromonas tunicata str. D2, Pseudoalteromonas tunicata strain D2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.