STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR29184.1Hypothetical protein; COG3487 Uncharacterized iron-regulated protein. (475 aa)    
Predicted Functional Partners:
EAR29185.1
Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites; COG3488 Predicted thiol oxidoreductase.
 
    0.960
EAR29186.1
Lipoprotein, putative; COG3488 Predicted thiol oxidoreductase.
 
    0.959
EAR29187.1
COG3489 Predicted periplasmic lipoprotein.
 
    0.935
EAR29188.1
COG3490 Uncharacterized protein conserved in bacteria.
 
    0.899
AfuA
Iron(III) ABC transporter, periplasmic iron(III)-binding protein; COG1840 ABC-type Fe3+ transport system, periplasmic component.
  
    0.861
Bfd
BFD-like (2Fe-2S)-binding region protein; COG2906 Bacterioferritin-associated ferredoxin.
  
  
 0.692
EAR26798.1
Hypothetical protein; COG5266 ABC-type Co2+ transport system, periplasmic component.
   
    0.646
EAR27498.1
Predicted periplasmic lipoprotein.
 
    0.607
EAR26797.1
COG3656 Predicted periplasmic protein.
   
    0.553
AfuB
Iron(III) ABC transporter, permease protein; COG1178 ABC-type Fe3+ transport system, permease component.
 
    0.495
Your Current Organism:
Pseudoalteromonas tunicata
NCBI taxonomy Id: 87626
Other names: P. tunicata D2, Pseudoalteromonas sp. D2, Pseudoalteromonas tunicata D2, Pseudoalteromonas tunicata str. D2, Pseudoalteromonas tunicata strain D2
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