STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RsuACOG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family. (229 aa)    
Predicted Functional Partners:
EAR26871.1
Hypothetical protein; COG0747 ABC-type dipeptide transport system, periplasmic component.
       0.775
der
GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.718
EAR26870.1
COG1585 Membrane protein implicated in regulation of membrane protease activity.
       0.682
EAR26867.1
Transcriptional regulator, BlaI family protein; COG3682 Predicted transcriptional regulator.
       0.675
cmk
Cytidine monophosphate (CMP) kinase; Belongs to the ubiquitous class of nucleotide kinase; COG0283 Cytidylate kinase.
 
  
 0.635
XthA
COG0708 Exonuclease III.
  
    0.611
EAR26869.1
COG0330 Membrane protease subunits, stomatin/prohibitin homologs.
       0.587
EAR28251.1
Hypothetical protein.
       0.553
rlmL
Putative methyltransferase with S-adenosyl-L-methionine-dependent methyltransferase domain; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family.
  
 
 0.494
ScpB
Hypothetical protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
  
  
 0.477
Your Current Organism:
Pseudoalteromonas tunicata
NCBI taxonomy Id: 87626
Other names: P. tunicata D2, Pseudoalteromonas sp. D2, Pseudoalteromonas tunicata D2, Pseudoalteromonas tunicata str. D2, Pseudoalteromonas tunicata strain D2
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