Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EAR27663.1 | EAR29046.1 | PTD2_17615 | PTD2_08379 | Putative membrane protein with ankyrin repeat; COG0666 FOG: Ankyrin repeat. | Putative orphan protein. | 0.704 |
EAR27663.1 | EAR30152.1 | PTD2_17615 | PTD2_01246 | Putative membrane protein with ankyrin repeat; COG0666 FOG: Ankyrin repeat. | COG0666 FOG: Ankyrin repeat. | 0.508 |
EAR27663.1 | HrpB | PTD2_17615 | PTD2_12839 | Putative membrane protein with ankyrin repeat; COG0666 FOG: Ankyrin repeat. | COG1643 HrpA-like helicases. | 0.760 |
EAR27663.1 | rpsO | PTD2_17615 | PTD2_16042 | Putative membrane protein with ankyrin repeat; COG0666 FOG: Ankyrin repeat. | 30S ribosomal subunit protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.432 |
EAR29046.1 | EAR27663.1 | PTD2_08379 | PTD2_17615 | Putative orphan protein. | Putative membrane protein with ankyrin repeat; COG0666 FOG: Ankyrin repeat. | 0.704 |
EAR29046.1 | HrpB | PTD2_08379 | PTD2_12839 | Putative orphan protein. | COG1643 HrpA-like helicases. | 0.579 |
EAR30152.1 | EAR27663.1 | PTD2_01246 | PTD2_17615 | COG0666 FOG: Ankyrin repeat. | Putative membrane protein with ankyrin repeat; COG0666 FOG: Ankyrin repeat. | 0.508 |
EAR30152.1 | HrpB | PTD2_01246 | PTD2_12839 | COG0666 FOG: Ankyrin repeat. | COG1643 HrpA-like helicases. | 0.579 |
HrpB | EAR27663.1 | PTD2_12839 | PTD2_17615 | COG1643 HrpA-like helicases. | Putative membrane protein with ankyrin repeat; COG0666 FOG: Ankyrin repeat. | 0.760 |
HrpB | EAR29046.1 | PTD2_12839 | PTD2_08379 | COG1643 HrpA-like helicases. | Putative orphan protein. | 0.579 |
HrpB | EAR30152.1 | PTD2_12839 | PTD2_01246 | COG1643 HrpA-like helicases. | COG0666 FOG: Ankyrin repeat. | 0.579 |
HrpB | RpsA | PTD2_12839 | PTD2_19857 | COG1643 HrpA-like helicases. | 30S ribosomal subunit protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.735 |
HrpB | rnd | PTD2_12839 | PTD2_02216 | COG1643 HrpA-like helicases. | Putative RNase D, processing tRNA precursors; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.743 |
HrpB | rpsD | PTD2_12839 | PTD2_06179 | COG1643 HrpA-like helicases. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.681 |
HrpB | rpsG | PTD2_12839 | PTD2_04936 | COG1643 HrpA-like helicases. | 30S ribosomal subunit protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.531 |
HrpB | rpsK | PTD2_12839 | PTD2_06184 | COG1643 HrpA-like helicases. | 30S ribosomal subunit protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.613 |
HrpB | rpsO | PTD2_12839 | PTD2_16042 | COG1643 HrpA-like helicases. | 30S ribosomal subunit protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.531 |
HrpB | rpsQ | PTD2_12839 | PTD2_10388 | COG1643 HrpA-like helicases. | 30S ribosomal subunit protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.584 |
RpsA | HrpB | PTD2_19857 | PTD2_12839 | 30S ribosomal subunit protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | COG1643 HrpA-like helicases. | 0.735 |
RpsA | rnd | PTD2_19857 | PTD2_02216 | 30S ribosomal subunit protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | Putative RNase D, processing tRNA precursors; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.952 |
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