STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR27263.1COG3099 Uncharacterized protein conserved in bacteria. (105 aa)    
Predicted Functional Partners:
EAR27261.1
Hypothetical protein; COG3137 Putative salt-induced outer membrane protein.
 
     0.813
EAR27260.1
Putative orphan protein; putative membrane protein.
       0.781
EAR27387.1
Hypothetical protein.
  
     0.770
EAR28810.1
COG3105 Uncharacterized protein conserved in bacteria.
  
     0.759
PriC
COG3923 Primosomal replication protein N''.
  
     0.744
Tus
DNA replication terminus site-binding protein.
  
     0.720
RseA
Putative anti sigma E (sigma 24) factor, negative regulator; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), wh [...]
  
     0.695
slyX
COG2900 Uncharacterized protein conserved in bacteria; Belongs to the SlyX family.
  
     0.677
BamC
Putative lipoprotein-34 NlpB; COG0577 ABC-type antimicrobial peptide transport system, permease component.
  
     0.677
EAR28006.1
Hypothetical protein.
  
     0.668
Your Current Organism:
Pseudoalteromonas tunicata
NCBI taxonomy Id: 87626
Other names: P. tunicata D2, Pseudoalteromonas sp. D2, Pseudoalteromonas tunicata D2, Pseudoalteromonas tunicata str. D2, Pseudoalteromonas tunicata strain D2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.