STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR26773.1Conserved hypothetcial protein; COG0790 FOG: TPR repeat, SEL1 subfamily. (98 aa)    
Predicted Functional Partners:
EAR29274.1
Hypothetical protein; COG0790 FOG: TPR repeat, SEL1 subfamily.
  
     0.677
EAR27620.1
Sel1-like repeat protein; COG0790 FOG: TPR repeat, SEL1 subfamily.
  
     0.657
EAR30528.1
Putative secreted protein with protein prenylyltransferase domain; COG0790 FOG: TPR repeat, SEL1 subfamily.
  
     0.612
EAR28950.1
Sodium-type polar flagellar protein motX; COG0790 FOG: TPR repeat, SEL1 subfamily.
  
     0.588
EAR26774.1
RNA-directed DNA polymerase (Reverse transcriptase); COG3344 Retron-type reverse transcriptase.
  
    0.468
Your Current Organism:
Pseudoalteromonas tunicata
NCBI taxonomy Id: 87626
Other names: P. tunicata D2, Pseudoalteromonas sp. D2, Pseudoalteromonas tunicata D2, Pseudoalteromonas tunicata str. D2, Pseudoalteromonas tunicata strain D2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.