STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PrnA-4Hypothetical protein; COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes. (498 aa)    
Predicted Functional Partners:
EAR27876.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
     0.876
trpB
Tryptophan synthase, beta protein; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
    
  0.803
trpA
Tryptophan synthase, alpha protein; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
     
  0.800
MalY
Putative sugar transporter; COG0477 Permeases of the major facilitator superfamily.
 
     0.791
NplT
Putative alpha-amylase; COG0366 Glycosidases; Belongs to the glycosyl hydrolase 13 family.
 
   
 0.778
EAR27761.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
     0.757
EAR27882.1
COG3387 Glucoamylase and related glycosyl hydrolases.
 
     0.756
EAR27673.1
Hypothetical protein.
 
     0.748
EAR30198.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
     0.734
EAR27670.1
Hypothetical TonB-dependent receptor; COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
     0.733
Your Current Organism:
Pseudoalteromonas tunicata
NCBI taxonomy Id: 87626
Other names: P. tunicata D2, Pseudoalteromonas sp. D2, Pseudoalteromonas tunicata D2, Pseudoalteromonas tunicata str. D2, Pseudoalteromonas tunicata strain D2
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