STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR28077.1COG0515 Serine/threonine protein kinase. (609 aa)    
Predicted Functional Partners:
EAR27409.1
COG1716 FOG: FHA domain.
   
 
 0.775
BkdA1
COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit.
 
     0.657
FabG
Putative 3-oxoacyl-(acyl-carrier protein) reductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
     0.655
EAR28080.1
Enoyl-CoA hydratase/isomerase family protein; COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
     0.654
MmsB
COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases; Belongs to the HIBADH-related family.
       0.605
EAR28082.1
COG1960 Acyl-CoA dehydrogenases.
       0.592
EAR27569.1
Putative orphan protein; COG0790 FOG: TPR repeat, SEL1 subfamily.
 
     0.587
EAR28081.1
COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.570
EAR29868.1
Putative orphan protein; COG3068 Uncharacterized protein conserved in bacteria.
  
     0.555
EAR29986.1
Hypothetical protein.
  
     0.552
Your Current Organism:
Pseudoalteromonas tunicata
NCBI taxonomy Id: 87626
Other names: P. tunicata D2, Pseudoalteromonas sp. D2, Pseudoalteromonas tunicata D2, Pseudoalteromonas tunicata str. D2, Pseudoalteromonas tunicata strain D2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.