node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EAR28414.1 | RsmF | PTD2_21402 | PTD2_21407 | COG2715 Uncharacterized membrane protein, required for spore maturation in B.subtilis. | Hypothetical protein; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA. | 0.747 |
RbgA | RsmF | PTD2_10018 | PTD2_21407 | Putative tRNA modification protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | Hypothetical protein; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA. | 0.791 |
RbgA | rlmE | PTD2_10018 | PTD2_15802 | Putative tRNA modification protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | Ribosomal RNA large subunit methyltransferase J; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. | 0.909 |
RbgA | rplC | PTD2_10018 | PTD2_10433 | Putative tRNA modification protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.909 |
RbgA | rplJ | PTD2_10018 | PTD2_04911 | Putative tRNA modification protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.893 |
RbgA | rplW | PTD2_10018 | PTD2_10423 | Putative tRNA modification protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.899 |
RbgA | rplX | PTD2_10018 | PTD2_06244 | Putative tRNA modification protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | 50S ribosomal subunit protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.892 |
RbgA | rpmD | PTD2_10018 | PTD2_06209 | Putative tRNA modification protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | COG1841 Ribosomal protein L30/L7E. | 0.956 |
RsmF | EAR28414.1 | PTD2_21407 | PTD2_21402 | Hypothetical protein; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA. | COG2715 Uncharacterized membrane protein, required for spore maturation in B.subtilis. | 0.747 |
RsmF | RbgA | PTD2_21407 | PTD2_10018 | Hypothetical protein; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA. | Putative tRNA modification protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | 0.791 |
RsmF | fmt | PTD2_21407 | PTD2_05055 | Hypothetical protein; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA. | 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.717 |
RsmF | rlmE | PTD2_21407 | PTD2_15802 | Hypothetical protein; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA. | Ribosomal RNA large subunit methyltransferase J; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. | 0.823 |
RsmF | rplC | PTD2_21407 | PTD2_10433 | Hypothetical protein; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA. | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.686 |
RsmF | rplJ | PTD2_21407 | PTD2_04911 | Hypothetical protein; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA. | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.744 |
RsmF | rplW | PTD2_21407 | PTD2_10423 | Hypothetical protein; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA. | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.687 |
RsmF | rplX | PTD2_21407 | PTD2_06244 | Hypothetical protein; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA. | 50S ribosomal subunit protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.706 |
RsmF | rpmD | PTD2_21407 | PTD2_06209 | Hypothetical protein; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA. | COG1841 Ribosomal protein L30/L7E. | 0.711 |
RsmF | thiI | PTD2_21407 | PTD2_14299 | Hypothetical protein; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA. | Thiamine biosynthesis protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.695 |
fmt | RsmF | PTD2_05055 | PTD2_21407 | 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | Hypothetical protein; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA. | 0.717 |
fmt | thiI | PTD2_05055 | PTD2_14299 | 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | Thiamine biosynthesis protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.405 |