AOY91813.1 protein (Cupriavidus sp. USMAA24)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AOY91813.1

ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)

Predicted Functional Partners:

AOY91814.1

0.953

AOY91815.1

0.948

AOY91812.1

0.883

AOY94063.1

0.878

AOY91816.1

0.795

AOY91817.1

0.791

AOY91811.1

0.634

AOY91138.1

0.584

AOY94824.1

0.497

AOY95636.1

0.457

Your Current Organism:

Cupriavidus sp. USMAA24

NCBI taxonomy Id: 876364
Other names: C. sp. USMAA2-4, Cupriavidus sp. USMAA2-4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOY91138.1	AOY91813.1	BKK79_04395	BKK79_08370	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.584
AOY91138.1	AOY94824.1	BKK79_04395	BKK79_23395	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408
AOY91811.1	AOY91812.1	BKK79_08355	BKK79_08365	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.986
AOY91811.1	AOY91813.1	BKK79_08355	BKK79_08370	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.634
AOY91811.1	AOY91814.1	BKK79_08355	BKK79_08375	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.649
AOY91811.1	AOY91815.1	BKK79_08355	BKK79_08380	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.684
AOY91811.1	AOY91816.1	BKK79_08355	BKK79_08385	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.888
AOY91811.1	AOY91817.1	BKK79_08355	BKK79_08390	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin-guanine dinucleotide biosynthesis protein MobA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.771
AOY91811.1	AOY94063.1	BKK79_08355	BKK79_08360	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AOY91812.1	AOY91811.1	BKK79_08365	BKK79_08355	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.986
AOY91812.1	AOY91813.1	BKK79_08365	BKK79_08370	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.883
AOY91812.1	AOY91814.1	BKK79_08365	BKK79_08375	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.886
AOY91812.1	AOY91815.1	BKK79_08365	BKK79_08380	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
AOY91812.1	AOY91816.1	BKK79_08365	BKK79_08385	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.910
AOY91812.1	AOY91817.1	BKK79_08365	BKK79_08390	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin-guanine dinucleotide biosynthesis protein MobA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.791
AOY91812.1	AOY94063.1	BKK79_08365	BKK79_08360	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
AOY91813.1	AOY91138.1	BKK79_08370	BKK79_04395	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.584
AOY91813.1	AOY91811.1	BKK79_08370	BKK79_08355	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.634
AOY91813.1	AOY91812.1	BKK79_08370	BKK79_08365	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.883
AOY91813.1	AOY91814.1	BKK79_08370	BKK79_08375	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953