Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
albADNA/RNA-binding protein Alba; Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes; Belongs to the histone-like Alba family. (95 aa)    
Predicted Functional Partners:
ADZ08366.1
UPF0147 protein; KEGG: mmg:MTBMA_c17940 hypothetical protein; HAMAP: Uncharacterised protein family UPF0147; PFAM: Uncharacterised protein family UPF0147; Belongs to the UPF0147 family.
  
     0.631
adkA
KEGG: msi:Msm_0737 adenylate kinase; HAMAP: Adenylate kinase; Belongs to the archaeal adenylate kinase family.
  
     0.612
ADZ10260.1
KEGG: mfv:Mfer_0091 adenylate kinase.
  
     0.598
ADZ08444.1
PFAM: Protein of unknown function DUF655; KEGG: mth:MTH1325 hypothetical protein.
  
     0.588
rpl39e
KEGG: tga:TGAM_1684 50S ribosomal protein L39e; HAMAP: 50S ribosomal protein L39e; PFAM: Ribosomal protein L39e; Belongs to the eukaryotic ribosomal protein eL39 family.
  
     0.548
ADZ08468.1
TIGRFAM: Conserved hypothetical protein CHP00061; KEGG: mmg:MTBMA_c16880 hypothetical protein.
  
    0.515
ADZ08844.1
Transcription factor CBF/NF-Y/histone domain-containing protein; PFAM: Transcription factor CBF/NF-Y/archaeal histone; KEGG: mmg:MTBMA_c02740 archaeal histone.
  
   
 0.501
cofH
7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit; Catalyzes the radical-mediated synthesis of 5-amino-5-(4- hydroxybenzyl)-6-(D-ribitylimino)-5,6-dihydrouracil from 5-amino-6-(D- ribitylamino)uracil and L-tyrosine.
      
 0.494
cofG
FO synthase subunit 1; Catalyzes the radical-mediated synthesis of 7,8-didemethyl-8- hydroxy-5-deazariboflavin (FO) from 5-amino-5-(4-hydroxybenzyl)-6-(D- ribitylimino)-5,6-dihydrouracil.
      
 0.494
cofH-2
FO synthase subunit 2; Catalyzes the radical-mediated synthesis of 5-amino-5-(4- hydroxybenzyl)-6-(D-ribitylimino)-5,6-dihydrouracil from 5-amino-6-(D- ribitylamino)uracil and L-tyrosine.
      
 0.494
Your Current Organism:
Methanobacterium lacus
NCBI taxonomy Id: 877455
Other names: DSM 24406, JCM 17760, M. lacus, Methanobacterium lacus Borrel et al. 2012, Methanobacterium sp. 17A1, Methanobacterium sp. AL-21, strain 17A1
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