STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ08327.1Cobalt ABC transporter, inner membrane subunit CbiQ; KEGG: mru:mru_0541 cobalt ABC transporter permease protein CbiQ1; TIGRFAM: Cobalt ABC transporter CbiQ, permease subunit; PFAM: Cobalt transport protein. (277 aa)    
Predicted Functional Partners:
ADZ08325.1
PFAM: Cobalamin (vitamin B12) biosynthesis CbiM; KEGG: mru:mru_0539 cobalamin biosynthesis protein CbiM1.
 
 0.996
ecfA
Cobalt ABC transporter, ATPase subunit; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 0.995
ADZ08326.1
KEGG: mth:MTH1706 cobalt transport protein CbiN.
 
 0.994
cbiM
Cobalamin biosynthesis protein CbiM; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import.
 
 0.985
cbiN
Cobalt transport protein; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import; Belongs to the CbiN family.
 
 
 0.947
ADZ09005.1
KEGG: mfv:Mfer_0953 cobalt abc transporter, inner membrane subunit CbiQ; TIGRFAM: Cobalt ABC transporter CbiQ, permease subunit; PFAM: Cobalt transport protein.
  
 
 
0.925
ADZ10539.1
PFAM: BioY protein; KEGG: mmg:MTBMA_c12990 biotin biosynthesis protein.
 
 
 0.909
ADZ08760.1
TIGRFAM: Methyl coenzyme M reductase system, component A2; PFAM: ABC transporter-like; KEGG: mmg:MTBMA_c13970 methyl-coenzyme M reductase, component A2; SMART: ATPase, AAA+ type, core.
  
 
 0.881
ADZ09242.1
ABC transporter related protein; KEGG: mmg:MTBMA_c06010 methyl-coenzyme M reductase component A2-like protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.
  
 
 0.881
ADZ10652.1
SMART: ATPase, AAA+ type, core; TIGRFAM: Methyl coenzyme M reductase system, component A2; KEGG: mmg:MTBMA_c13970 methyl-coenzyme M reductase, component A2; PFAM: ABC transporter-like.
  
 
 0.881
Your Current Organism:
Methanobacterium lacus
NCBI taxonomy Id: 877455
Other names: DSM 24406, JCM 17760, M. lacus, Methanobacterium lacus Borrel et al. 2012, Methanobacterium sp. 17A1, Methanobacterium sp. AL-21, strain 17A1
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