Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADZ08389.1Transcriptional regulator, ArsR family; KEGG: mpd:MCP_0329 putative transcriptional regulator; PFAM: 4-vinyl reductase, 4VR; HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR. (252 aa)    
Predicted Functional Partners:
ADZ08390.1
KEGG: mfv:Mfer_0426 flavodoxin/nitric oxide synthase; PFAM: Flavodoxin/nitric oxide synthase; Beta-lactamase-like; SMART: Beta-lactamase-like.
     
 0.583
ADZ08816.1
Radical SAM domain protein; KEGG: msi:Msm_0385 anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase elongator protein; PFAM: Radical SAM; Cobalamin (vitamin B12)-binding; SMART: Elongator protein 3/MiaB/NifB.
  
  
 0.561
ADZ08966.1
KEGG: mfv:Mfer_0025 radical sam domain protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB.
  
  
 0.561
ADZ10069.1
Radical SAM domain protein; KEGG: msi:Msm_0385 anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase elongator protein; PFAM: Radical SAM; Cobalamin (vitamin B12)-binding; SMART: Elongator protein 3/MiaB/NifB.
  
  
 0.561
ADZ10203.1
Radical SAM domain protein; KEGG: mth:MTH1784 Mg-protoporphyrin IX monomethyl ester oxidative cyclase; PFAM: Radical SAM; Cobalamin (vitamin B12)-binding; SMART: Elongator protein 3/MiaB/NifB.
  
  
 0.561
ADZ08602.1
KEGG: mth:MTH1167 methyl coenzyme M reductase I, D protein; TIGRFAM: Methyl-coenzyme M reductase, protein D; PFAM: Methyl-coenzyme M reductase, protein D.
  
     0.534
ADZ08940.1
Methanogenesis marker protein 17; KEGG: mth:MTH1870 hypothetical protein; TIGRFAM: Uncharacterised conserved protein UCP019464, methanogenesis; PFAM: Uncharacterised conserved protein UCP019464, methanogenesis.
  
     0.533
ADZ08391.1
PFAM: Rubrerythrin; KEGG: mae:Maeo_0954 rubrerythrin.
     
 0.527
ADZ10360.1
Transcriptional regulator, TrmB; KEGG: mth:MTH1454 hypothetical protein; manually curated; PFAM: Transcription regulator TrmB, N-terminal.
 
   
 0.514
ADZ09674.1
NADPH dehydrogenase; KEGG: cbt:CLH_2467 oxidoreductase, FAD/FMN-binding; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal.
  
  
 0.490
Your Current Organism:
Methanobacterium lacus
NCBI taxonomy Id: 877455
Other names: DSM 24406, JCM 17760, M. lacus, Methanobacterium lacus Borrel et al. 2012, Methanobacterium sp. 17A1, Methanobacterium sp. AL-21, strain 17A1
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