Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADZ08442.1PFAM: Carboxymuconolactone decarboxylase; KEGG: mma:MM_0143 4-carboxymuconolactone decarboxylase. (106 aa)    
Predicted Functional Partners:
ADZ08441.1
Hypothetical protein.
       0.773
rsmA
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily.
       0.722
ADZ08440.1
Methylase; KEGG: mmg:MTBMA_c17150 methyltransferase; TIGRFAM: Putative methylase; PFAM: Methyltransferase small.
       0.649
ADZ09918.1
KEGG: cbb:CLD_3584 hypothetical protein.
  
     0.558
ADZ08444.1
PFAM: Protein of unknown function DUF655; KEGG: mth:MTH1325 hypothetical protein.
       0.530
ADZ09023.1
Hypothetical protein; KEGG: dae:Dtox_3122 tetratricopeptide TPR_2 repeat protein.
  
     0.521
ADZ09879.1
PFAM: Conserved hypothetical protein, MTH865; KEGG: mae:Maeo_0093 MTH865-like family protein.
 
    0.467
ADZ09498.1
PFAM: Protein of unknown function DUF1700; KEGG: btl:BALH_3109 hypothetical protein.
 
     0.458
ADZ10536.1
PFAM: Nitrogen regulatory protein PII; KEGG: mmg:MTBMA_c11600 small GTPase.
 
     0.452
ADZ09682.1
GAF domain protein; KEGG: mpi:Mpet_0436 putative GAF sensor protein; PFAM: GAF; SMART: GAF.
  
     0.422
Your Current Organism:
Methanobacterium lacus
NCBI taxonomy Id: 877455
Other names: DSM 24406, JCM 17760, M. lacus, Methanobacterium lacus Borrel et al. 2012, Methanobacterium sp. 17A1, Methanobacterium sp. AL-21, strain 17A1
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