STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ08533.1PFAM: Amino acid-binding ACT; KEGG: mmg:MTBMA_c16230 energy-converting hydrogenase B, subunit Q. (218 aa)    
Predicted Functional Partners:
ADZ08527.1
PFAM: Energy-converting hydrogenase B, subunit P; KEGG: msi:Msm_1061 energy-converting hydrogenase B, subunit P, EhbP.
     
 0.745
ADZ08473.1
TIGRFAM: Coenzyme F420 hydrogenase, subunit beta; KEGG: mmg:MTBMA_c16830 F420-reducing hydrogenase, subunit beta; PFAM: Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal; Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal.
 
  
 0.681
ADZ10337.1
KEGG: mfv:Mfer_1298 uroporphyrinogen III synthase HEM4; PFAM: Tetrapyrrole biosynthesis, uroporphyrinogen III synthase.
  
    0.681
htpX
Protease htpX; KEGG: mmg:MTBMA_c09550 heat shock protein; HAMAP: Peptidase M48, protease HtpX, putative; PFAM: Peptidase M48; Belongs to the peptidase M48B family.
  
    0.660
htpX-2
Protease htpX; KEGG: dth:DICTH_0757 heat shock protein HtpX; HAMAP: Peptidase M48, protease HtpX, putative; PFAM: Peptidase M48; Belongs to the peptidase M48B family.
  
    0.660
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
 
    0.627
mtd
F420-dependent methylenetetrahydromethanopterin dehydrogenase; Catalyzes the reversible reduction of methenyl-H(4)MPT(+) to methylene-H(4)MPT.
  
     0.613
ADZ08470.1
TIGRFAM: Coenzyme F420 hydrogenase, subunit alpha; KEGG: mth:MTH1300 coenzyme F420-reducing hydrogenase, alpha subunit; PFAM: Nickel-dependent hydrogenase, large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
  
   
 0.611
ADZ09228.1
PFAM: Peptidase M48; KEGG: mmg:MTBMA_c03880 peptidase related protein.
  
    0.597
ADZ08511.1
PFAM: cation antiporter; KEGG: mmg:MTBMA_c16390 energy-converting hydrogenase B, subunit A.
     
 0.591
Your Current Organism:
Methanobacterium lacus
NCBI taxonomy Id: 877455
Other names: DSM 24406, JCM 17760, M. lacus, Methanobacterium lacus Borrel et al. 2012, Methanobacterium sp. 17A1, Methanobacterium sp. AL-21, strain 17A1
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