STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ08539.1KEGG: msi:Msm_1059 RecB family exonuclease. (268 aa)    
Predicted Functional Partners:
ADZ08540.1
PFAM: Homoserine dehydrogenase, catalytic; Aspartate/homoserine dehydrogenase, NAD-binding; Amino acid-binding ACT; KEGG: mmg:MTBMA_c16200 homoserine dehydrogenase.
       0.547
ADZ10379.1
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: mac:MA2582 hypothetical protein.
 
   
 0.521
ADZ08541.1
DNA polymerase beta domain protein region; PFAM: Nucleotidyl transferase domain; KEGG: mth:MTH1231 hypothetical protein.
 
     0.508
ADZ10547.1
PFAM: Lysylphosphatidylglycerol synthetase/UPF0104; KEGG: mmg:MTBMA_c12820 hypothetical protein.
 
     0.494
ADZ09913.1
TIGRFAM: Parallel beta-helix repeat-2; Domain of unknown function DUF11; KEGG: msi:Msm_0282 adhesin-like protein.
  
     0.461
ADZ08526.1
KEGG: mth:MTH1237 NADH dehydrogenase (ubiquinone), subunit 1 related protein.
  
     0.443
ADZ08320.1
PFAM: Protein of unknown function DUF63; KEGG: mth:MTH1480 hypothetical protein.
  
     0.441
ADZ08813.1
Cell division control protein 6-like protein; Involved in regulation of DNA replication.
 
     0.428
ADZ09922.1
PFAM: Protein of unknown function DUF457, transmembrane; KEGG: cni:Calni_0952 membrane-bound metal-dependent hydrolase.
  
     0.417
ADZ08542.1
PFAM: Domain of unknown function DUF296; KEGG: bba:Bd1709 putative DNA-binding protein.
 
     0.411
Your Current Organism:
Methanobacterium lacus
NCBI taxonomy Id: 877455
Other names: DSM 24406, JCM 17760, M. lacus, Methanobacterium lacus Borrel et al. 2012, Methanobacterium sp. 17A1, Methanobacterium sp. AL-21, strain 17A1
Server load: medium (72%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.