STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ08642.1KEGG: mbn:Mboo_0945 cytosine deaminase; PFAM: CMP/dCMP deaminase, zinc-binding. (157 aa)    
Predicted Functional Partners:
ADZ08635.1
TIGRFAM: Uracil phosphoribosyl transferase; KEGG: mmg:MTBMA_c14980 uracil phosphoribosyltransferase.
     
  0.900
ADZ08274.1
KEGG: mth:MTH352 hypothetical protein; PFAM: Cupin 2, conserved barrel; SMART: Cupin 1.
 
      0.686
ADZ08643.1
UPF0272 protein; TIGRFAM: Uncharacterised protein family UPF0272; HAMAP: Uncharacterised protein family UPF0272; KEGG: mth:MTH1109 hypothetical protein; PFAM: Uncharacterised protein family UPF0272; Belongs to the LarC family.
       0.572
queC
exsB protein; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.
       0.559
ADZ08645.1
PFAM: 4-vinyl reductase, 4VR; KEGG: mmg:MTBMA_c12390 hypothetical protein.
       0.495
Your Current Organism:
Methanobacterium lacus
NCBI taxonomy Id: 877455
Other names: DSM 24406, JCM 17760, M. lacus, Methanobacterium lacus Borrel et al. 2012, Methanobacterium sp. 17A1, Methanobacterium sp. AL-21, strain 17A1
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