STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ08660.1PFAM: Peptidase M50; KEGG: mth:MTH986 hypothetical protein. (211 aa)    
Predicted Functional Partners:
ADZ08659.1
KEGG: mmg:MTBMA_c13710 hypothetical protein; TIGRFAM: Putative methanogenesis marker protein 1; YcaO-like; PFAM: YcaO-like.
 
     0.850
ADZ08661.1
TIGRFAM: PAS; PFAM: Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain; PAS fold; ATPase-like, ATP-binding domain; KEGG: mmg:MTBMA_c13690 sensory transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; PAS.
 
     0.654
ADZ08662.1
Alcohol dehydrogenase; KEGG: gur:Gura_3532 iron-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type.
       0.608
ADZ08664.1
PFAM: Peptidase M24, structural domain; Creatinase; KEGG: mfv:Mfer_0350 peptidase M24; Belongs to the peptidase M24B family.
 
    0.546
rpl13
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
    0.495
rps9
KEGG: mth:MTH39 ribosomal protein S16; TIGRFAM: Ribosomal protein S9, archaeal; PFAM: Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
    0.495
pth
Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.
       0.492
ef1b
Elongation factor 1-beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.
 
     0.475
ADZ08656.1
KEGG: mst:Msp_1158 Zn-ribbon RNA-binding protein.
       0.450
ADZ08657.1
PFAM: Aspartate/glutamate/uridylate kinase; KEGG: mfv:Mfer_0582 aspartate/glutamate/uridylate kinase.
       0.450
Your Current Organism:
Methanobacterium lacus
NCBI taxonomy Id: 877455
Other names: DSM 24406, JCM 17760, M. lacus, Methanobacterium lacus Borrel et al. 2012, Methanobacterium sp. 17A1, Methanobacterium sp. AL-21, strain 17A1
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