STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ08680.1KEGG: mth:MTH964 hypothetical protein. (299 aa)    
Predicted Functional Partners:
ADZ08681.1
KEGG: mth:MTH963 fumarate hydratase, class I related protein; TIGRFAM: Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain; PFAM: Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain.
 
     0.905
ADZ08679.1
MmgE/PrpD family protein; PFAM: MmgE/PrpD; KEGG: mfv:Mfer_0669 MmgE/PrpD family protein.
 
     0.877
ADZ08682.1
PFAM: Citrate synthase-like; KEGG: mmg:MTBMA_c13480 citrate synthase.
 
     0.787
tiaS
Domain of unknown function DUF1743; ATP-dependent agmatine transferase that catalyzes the formation of 2-agmatinylcytidine (agm2C) at the wobble position (C34) of tRNA(Ile2), converting the codon specificity from AUG to AUA.
       0.522
atpC
V-type ATP synthase subunit C; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
     0.516
ADZ08683.1
TIGRFAM: ATPase, A1A0, subunit H; KEGG: mth:MTH961 hypothetical protein.
       0.471
ADZ08684.1
V-type ATPase 116 kDa subunit; KEGG: mth:MTH960 V-type ATP synthase subunit I; manually curated; PFAM: ATPase, V0/A0 complex, 116kDa subunit; Belongs to the V-ATPase 116 kDa subunit family.
       0.463
ADZ08685.1
KEGG: mmg:MTBMA_c13450 A1AO ATPase, subunit K; HAMAP: ATPase, F0 complex, subunit C; PFAM: ATPase, F0/V0 complex, subunit C; Belongs to the V-ATPase proteolipid subunit family.
       0.463
atpE
V-type proton ATPase subunit E; Produces ATP from ADP in the presence of a proton gradient across the membrane.
       0.462
atpF
V-type ATP synthase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.
       0.448
Your Current Organism:
Methanobacterium lacus
NCBI taxonomy Id: 877455
Other names: DSM 24406, JCM 17760, M. lacus, Methanobacterium lacus Borrel et al. 2012, Methanobacterium sp. 17A1, Methanobacterium sp. AL-21, strain 17A1
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