STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ08766.1KEGG: mba:Mbar_A1826 hypothetical protein; PFAM: PBS lyase HEAT-like repeat; Tetratricopeptide TPR-1; SMART: PBS lyase HEAT-like repeat; Tetratricopeptide repeat. (748 aa)    
Predicted Functional Partners:
ADZ08767.1
PFAM: Peptidase U32; KEGG: mem:Memar_1293 peptidase U32.
       0.533
ADZ09636.1
KEGG: ptm:GSPATT00039540001 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat.
  
     0.485
ADZ09790.1
KEGG: ptm:GSPATT00039790001 hypothetical protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; Uncharacterised protein family UPF0286; SMART: Tetratricopeptide repeat.
  
     0.460
ADZ09676.1
KEGG: mif:Metin_0662 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat.
 
     0.408
Your Current Organism:
Methanobacterium lacus
NCBI taxonomy Id: 877455
Other names: DSM 24406, JCM 17760, M. lacus, Methanobacterium lacus Borrel et al. 2012, Methanobacterium sp. 17A1, Methanobacterium sp. AL-21, strain 17A1
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