STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ08889.1Roadblock/LC7 family protein; KEGG: mmg:MTBMA_c03980 hypothetical protein; PFAM: Dynein light chain-related; SMART: Dynein light chain-related. (408 aa)    
Predicted Functional Partners:
ADZ09188.1
TIGRFAM: Small GTP-binding protein; PFAM: Mitochondrial Rho-like; KEGG: mth:MTH765 GTP-binding protein Rab related protein; SMART: Ras small GTPase, Ras type.
  
 
 0.881
ADZ09577.1
TIGRFAM: Small GTP-binding protein; PFAM: Mitochondrial Rho-like; KEGG: mth:MTH594 hypothetical protein; SMART: Ras small GTPase, Rab type.
  
 
 0.881
ADZ10536.1
PFAM: Nitrogen regulatory protein PII; KEGG: mmg:MTBMA_c11600 small GTPase.
  
 
 0.881
rfcL
Replication factor C large subunit; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcL subfamily.
       0.588
rfcS
Replication factor C small subunit; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcS subfamily.
       0.588
ADZ08890.1
Hydrogen dehydrogenase; KEGG: mpd:MCP_2492 F420-non-reducing hydrogenase subunit A; PFAM: Nickel-dependent hydrogenase, large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
       0.445
ADZ08892.1
KEGG: mpd:MCP_2494 hypothetical protein.
       0.432
ADZ08891.1
PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; KEGG: mpd:MCP_2493 F420-non-reducing hydrogenase subunit G.
       0.431
ADZ08893.1
PFAM: 4Fe-4S binding domain; KEGG: mpi:Mpet_2721 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
       0.427
Your Current Organism:
Methanobacterium lacus
NCBI taxonomy Id: 877455
Other names: DSM 24406, JCM 17760, M. lacus, Methanobacterium lacus Borrel et al. 2012, Methanobacterium sp. 17A1, Methanobacterium sp. AL-21, strain 17A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.