Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADZ08892.1KEGG: mpd:MCP_2494 hypothetical protein. (188 aa)    
Predicted Functional Partners:
ADZ08891.1
PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; KEGG: mpd:MCP_2493 F420-non-reducing hydrogenase subunit G.
       0.864
ADZ08893.1
PFAM: 4Fe-4S binding domain; KEGG: mpi:Mpet_2721 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
       0.852
ADZ08890.1
Hydrogen dehydrogenase; KEGG: mpd:MCP_2492 F420-non-reducing hydrogenase subunit A; PFAM: Nickel-dependent hydrogenase, large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
       0.761
ADZ08889.1
Roadblock/LC7 family protein; KEGG: mmg:MTBMA_c03980 hypothetical protein; PFAM: Dynein light chain-related; SMART: Dynein light chain-related.
       0.432
ADZ08894.1
PFAM: Peptidase C60, sortase A/B; KEGG: mth:MTH1829 hypothetical protein.
       0.400
ADZ08895.1
PFAM: Mechanosensitive ion channel MscS; KEGG: mmg:MTBMA_c04000 mechanosensitive ion channel.
       0.400
rnz
Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.
       0.400
Your Current Organism:
Methanobacterium lacus
NCBI taxonomy Id: 877455
Other names: DSM 24406, JCM 17760, M. lacus, Methanobacterium lacus Borrel et al. 2012, Methanobacterium sp. 17A1, Methanobacterium sp. AL-21, strain 17A1
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