Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ADZ09135.1PFAM: Protein of unknown function DUF422; KEGG: rci:LRC395 hypothetical protein. (310 aa)    
Predicted Functional Partners:
ADZ09134.1
PFAM: Protein of unknown function DUF422; KEGG: aca:ACP_2245 hypothetical protein.
 
    
0.676
ADZ09133.1
PFAM: UbiA prenyltransferase; KEGG: pto:PTO0182 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase.
       0.664
ADZ09132.1
PFAM: Glycosyl transferase, family 2; KEGG: mfv:Mfer_1074 glycosyl transferase family 2.
       0.582
ADZ09136.1
PFAM: Polysaccharide biosynthesis protein; KEGG: pho:PH0421 lipopolysaccharide O-side chain biosynthesis protein (O-antigen transporter).
       0.489
Your Current Organism:
Methanobacterium lacus
NCBI taxonomy Id: 877455
Other names: DSM 24406, JCM 17760, M. lacus, Methanobacterium lacus Borrel et al. 2012, Methanobacterium sp. 17A1, Methanobacterium sp. AL-21, strain 17A1
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