STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ09268.14Fe-4S ferredoxin iron-sulfur binding domain-containing protein; PFAM: 4Fe-4S binding domain; KEGG: mst:Msp_0190 MapA. (540 aa)    
Predicted Functional Partners:
ADZ09270.1
KEGG: msi:Msm_0515 methanol:cobalamin methyltransferase. MtaB.
 
   
 0.874
ADZ09269.1
Cobalamin B12-binding domain protein; PFAM: Cobalamin (vitamin B12)-binding; Methionine synthase, cobalamin (vitamin B12)-binding module, cap; KEGG: msi:Msm_0516 corrinoid protein (methionine synthase-related), MtaC.
 
   
 0.829
ADZ09271.1
KEGG: msi:Msm_0519 hypothetical protein.
 
     0.811
ADZ09272.1
Methyltransferase MtaA/CmuA family; KEGG: msi:Msm_0518 methylcobalamin:coenzyme M methyltransferase, MtaA; TIGRFAM: Methyltransferase MtaA/CmuA; PFAM: Uroporphyrinogen decarboxylase (URO-D).
 
   
 0.792
ADZ09599.1
KEGG: mmg:MTBMA_c09620 hypothetical protein.
  
     0.471
ADZ10348.1
Methanogen marker protein 4; TIGRFAM: Methyltransferase Mtx, subunit X; KEGG: mfv:Mfer_0594 methanogen marker protein 4.
  
     0.443
ADZ09267.1
Transcriptional regulator, ArsR family; KEGG: mmg:MTBMA_c17390 transcriptional regulator; PFAM: 4-vinyl reductase, 4VR; HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR.
       0.437
ADZ08974.1
PFAM: Polysaccharide biosynthesis protein; KEGG: mru:mru_1880 polysaccharide biosynthesis protein.
  
     0.427
ADZ10682.1
Methanogenesis marker protein 8; KEGG: rci:LRC199 hypothetical protein; TIGRFAM: Uncharacterised conserved protein UCP004929, methanogenesis; PFAM: Uncharacterised conserved protein UCP004929, methanogenesis.
  
     0.422
Your Current Organism:
Methanobacterium lacus
NCBI taxonomy Id: 877455
Other names: DSM 24406, JCM 17760, M. lacus, Methanobacterium lacus Borrel et al. 2012, Methanobacterium sp. 17A1, Methanobacterium sp. AL-21, strain 17A1
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