STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ09301.1KEGG: mfv:Mfer_1029 radical sam domain protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB. (506 aa)    
Predicted Functional Partners:
ADZ10203.1
Radical SAM domain protein; KEGG: mth:MTH1784 Mg-protoporphyrin IX monomethyl ester oxidative cyclase; PFAM: Radical SAM; Cobalamin (vitamin B12)-binding; SMART: Elongator protein 3/MiaB/NifB.
 
  
 0.579
ADZ09302.1
PFAM: Major facilitator superfamily MFS-1; KEGG: mth:MTH104 multidrug transporter-like protein.
  
  
 0.568
ADZ10069.1
Radical SAM domain protein; KEGG: msi:Msm_0385 anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase elongator protein; PFAM: Radical SAM; Cobalamin (vitamin B12)-binding; SMART: Elongator protein 3/MiaB/NifB.
 
  
 0.532
ADZ08816.1
Radical SAM domain protein; KEGG: msi:Msm_0385 anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase elongator protein; PFAM: Radical SAM; Cobalamin (vitamin B12)-binding; SMART: Elongator protein 3/MiaB/NifB.
 
  
 0.519
ADZ09300.1
TIGRFAM: Bacterial carbamate kinase; KEGG: mem:Memar_0247 carbamate kinase; PFAM: Aspartate/glutamate/uridylate kinase; Belongs to the carbamate kinase family.
  
    0.503
ADZ10717.1
PFAM: Bacterial extracellular solute-binding, family 1; KEGG: mfv:Mfer_0984 extracellular solute-binding protein family 1.
 
  
 0.437
ADZ10336.1
TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; KEGG: mru:mru_1541 uroporphyrin-III C-methyltransferase CobA; PFAM: Tetrapyrrole methylase.
 
  
 0.420
ADZ09488.1
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: mth:MTH1177 hypothetical protein.
 
  
 0.411
Your Current Organism:
Methanobacterium lacus
NCBI taxonomy Id: 877455
Other names: DSM 24406, JCM 17760, M. lacus, Methanobacterium lacus Borrel et al. 2012, Methanobacterium sp. 17A1, Methanobacterium sp. AL-21, strain 17A1
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