STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ09314.1PFAM: Amine oxidase; KEGG: gbm:Gbem_2934 hypothetical protein. (537 aa)    
Predicted Functional Partners:
ADZ09272.1
Methyltransferase MtaA/CmuA family; KEGG: msi:Msm_0518 methylcobalamin:coenzyme M methyltransferase, MtaA; TIGRFAM: Methyltransferase MtaA/CmuA; PFAM: Uroporphyrinogen decarboxylase (URO-D).
  
  
 0.945
ADZ08973.1
PFAM: Methyltransferase type 11; KEGG: npu:Npun_F4534 methyltransferase type 11.
 
 
 0.674
ADZ09328.1
Porphobilinogen synthase; KEGG: mru:mru_1560 delta-aminolevulinic acid dehydratase HemB; PFAM: Tetrapyrrole biosynthesis, porphobilinogen synthase; Belongs to the ALAD family.
  
  
 0.578
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.
  
  
 0.578
ADZ08648.1
KEGG: mmg:MTBMA_c10340 hypothetical protein.
  
    0.572
ADZ09138.1
KEGG: mmg:MTBMA_c10340 hypothetical protein.
  
    0.572
ADZ09462.1
KEGG: mmg:MTBMA_c10340 hypothetical protein.
  
    0.572
ADZ10337.1
KEGG: mfv:Mfer_1298 uroporphyrinogen III synthase HEM4; PFAM: Tetrapyrrole biosynthesis, uroporphyrinogen III synthase.
  
  
 0.540
ADZ10570.1
PFAM: GtrA-like protein; KEGG: ssm:Spirs_4234 GtrA family protein.
 
     0.525
proS
Prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro).
 
  
 0.505
Your Current Organism:
Methanobacterium lacus
NCBI taxonomy Id: 877455
Other names: DSM 24406, JCM 17760, M. lacus, Methanobacterium lacus Borrel et al. 2012, Methanobacterium sp. 17A1, Methanobacterium sp. AL-21, strain 17A1
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