Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ADZ09436.1KEGG: mth:MTH359 hypothetical protein; PFAM: Transglutaminase-like; Pseudomurein-binding repeat; SMART: Transglutaminase-like. (330 aa)    
Predicted Functional Partners:
ADZ09210.1
KEGG: mmg:MTBMA_c06320 hypothetical protein.
  
     0.475
ADZ10637.1
Sortase family protein; KEGG: mth:MTH1030 hypothetical protein; TIGRFAM: Peptidase C60, sortase A/B; PFAM: Peptidase C60, sortase A/B.
  
     0.458
ADZ10382.1
PFAM: RDD; KEGG: mfv:Mfer_1285 rdd domain containing protein.
 
    0.425
ADZ10274.1
KEGG: mmg:MTBMA_c02300 MurG-related protein.
  
     0.408
Your Current Organism:
Methanobacterium lacus
NCBI taxonomy Id: 877455
Other names: DSM 24406, JCM 17760, M. lacus, Methanobacterium lacus Borrel et al. 2012, Methanobacterium sp. 17A1, Methanobacterium sp. AL-21, strain 17A1
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