STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ09599.1KEGG: mmg:MTBMA_c09620 hypothetical protein. (313 aa)    
Predicted Functional Partners:
ADZ09598.1
2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
       0.821
cca
CCA-adding enzyme; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate.
 
     0.641
ADZ09271.1
KEGG: msi:Msm_0519 hypothetical protein.
  
     0.593
ADZ09193.1
KEGG: mmg:MTBMA_c08860 hypothetical protein.
  
     0.572
ADZ08964.1
KEGG: mmg:MTBMA_c04630 aspartate aminotransferase; PFAM: Aminotransferase, class I/classII.
 
      0.563
aroB
3-dehydroquinate synthase; Catalyzes the oxidative deamination and cyclization of 2- amino-3,7-dideoxy-D-threo-hept-6-ulosonic acid (ADH) to yield 3- dehydroquinate (DHQ), which is fed into the canonical shikimic pathway of aromatic amino acid biosynthesis; Belongs to the archaeal-type DHQ synthase family.
       0.556
ADZ09270.1
KEGG: msi:Msm_0515 methanol:cobalamin methyltransferase. MtaB.
  
     0.516
ADZ10544.1
HAMAP: Uncharacterised protein family UPF0292; PFAM: Toprim domain; KEGG: mth:MTH890 hypothetical protein; SMART: Toprim domain.
  
     0.515
ADZ09268.1
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; PFAM: 4Fe-4S binding domain; KEGG: mst:Msp_0190 MapA.
  
     0.471
ADZ10682.1
Methanogenesis marker protein 8; KEGG: rci:LRC199 hypothetical protein; TIGRFAM: Uncharacterised conserved protein UCP004929, methanogenesis; PFAM: Uncharacterised conserved protein UCP004929, methanogenesis.
  
     0.426
Your Current Organism:
Methanobacterium lacus
NCBI taxonomy Id: 877455
Other names: DSM 24406, JCM 17760, M. lacus, Methanobacterium lacus Borrel et al. 2012, Methanobacterium sp. 17A1, Methanobacterium sp. AL-21, strain 17A1
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