STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ09924.1Regulatory protein MarR; KEGG: nth:Nther_1956 transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR. (150 aa)    
Predicted Functional Partners:
ADZ09925.1
KEGG: tsi:TSIB_0718 putative transport protein; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1.
     
 0.627
ADZ08531.1
PFAM: Polysaccharide pyruvyl transferase; KEGG: shi:Shel_23790 hypothetical protein.
 
     0.569
ADZ09023.1
Hypothetical protein; KEGG: dae:Dtox_3122 tetratricopeptide TPR_2 repeat protein.
  
     0.558
ADZ09458.1
KEGG: tva:TVAG_021770 hypothetical protein.
  
     0.550
ADZ09923.1
KEGG: amt:Amet_3352 hypothetical protein.
       0.494
ADZ09922.1
PFAM: Protein of unknown function DUF457, transmembrane; KEGG: cni:Calni_0952 membrane-bound metal-dependent hydrolase.
  
     0.490
ADZ10379.1
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: mac:MA2582 hypothetical protein.
 
     0.441
ADZ08487.1
PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: cac:CA_C3374 acetyltransferase.
 
  
 0.404
Your Current Organism:
Methanobacterium lacus
NCBI taxonomy Id: 877455
Other names: DSM 24406, JCM 17760, M. lacus, Methanobacterium lacus Borrel et al. 2012, Methanobacterium sp. 17A1, Methanobacterium sp. AL-21, strain 17A1
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