STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ10109.1ABC-type transporter, periplasmic subunit family 3; SMART: Extracellular solute-binding protein, family 3; KEGG: mfv:Mfer_0616 aliphatic sulfonates family abc transporter, periplasmic ligand-binding protein. (316 aa)    
Predicted Functional Partners:
ADZ09887.1
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: msi:Msm_0291 nitrate/sulfonate/bicarbonate ABC transporter, permease component, TauC.
 
  
 0.913
ADZ09886.1
Taurine-transporting ATPase; PFAM: ABC transporter-like; KEGG: mtp:Mthe_0218 ABC transporter related; SMART: ATPase, AAA+ type, core.
 
  
 0.895
nucS
UPF0286 protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.
       0.631
mer
5,10-methylenetetrahydromethanopterin reductase; Catalyzes the reversible reduction of methylene-H(4)MPT to methyl-H(4)MPT; Belongs to the mer family.
  
  
 0.620
ADZ10111.1
Cobalamin B12-binding domain protein; PFAM: Cobalamin (vitamin B12)-binding; KEGG: mmh:Mmah_0910 cobalamin B12-binding domain protein.
 
  
 0.525
ADZ09975.1
Nitrite reductase (NAD(P)H); KEGG: mba:Mbar_A3664 hypothetical protein; PFAM: Nitrite/sulphite reductase 4Fe-4S domain; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like.
 
  
 0.414
Your Current Organism:
Methanobacterium lacus
NCBI taxonomy Id: 877455
Other names: DSM 24406, JCM 17760, M. lacus, Methanobacterium lacus Borrel et al. 2012, Methanobacterium sp. 17A1, Methanobacterium sp. AL-21, strain 17A1
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