STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ10131.1Signal peptide peptidase SppA, 36K type; KEGG: mth:MTH806 protease IV; TIGRFAM: Peptidase S49, SppA; PFAM: Peptidase S49. (312 aa)    
Predicted Functional Partners:
ADZ10132.1
Redox-active disulfide protein 1; KEGG: mmg:MTBMA_c12030 thioredoxin; TIGRFAM: Thioredoxins/glutaredoxin; PFAM: Glutaredoxin.
 
   
 0.696
cbiD
cobalt-precorrin-6A synthase (deacetylating); Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.
     
 0.580
ADZ09991.1
PFAM: Domain of unknown function DUF304l; KEGG: mth:MTH726 hypothetical protein.
  
    0.514
ADZ10581.1
PFAM: Domain of unknown function DUF304l; KEGG: mmg:MTBMA_c11220 hypothetical protein.
  
    0.514
secD
Preprotein translocase, SecD/SecF/SecDF; Involved in protein export.
 
   
 0.462
ADZ08266.1
PFAM: Haloacid dehalogenase-like hydrolase; KEGG: mth:MTH1793 hypothetical protein.
 
  
 0.459
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
 
   
 0.426
secF
Preprotein translocase, SecD/SecF/SecDF; Involved in protein export.
 
   
 0.409
ADZ08746.1
PFAM: Peptidase M50; KEGG: pab:PAB1063 hypothetical protein.
 
   
 0.408
ADZ10053.1
PFAM: Peptidase S1/S6, chymotrypsin/Hap; KEGG: drm:Dred_0467 peptidase S1 and S6, chymotrypsin/Hap.
     
 0.407
Your Current Organism:
Methanobacterium lacus
NCBI taxonomy Id: 877455
Other names: DSM 24406, JCM 17760, M. lacus, Methanobacterium lacus Borrel et al. 2012, Methanobacterium sp. 17A1, Methanobacterium sp. AL-21, strain 17A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.