STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ10203.1Radical SAM domain protein; KEGG: mth:MTH1784 Mg-protoporphyrin IX monomethyl ester oxidative cyclase; PFAM: Radical SAM; Cobalamin (vitamin B12)-binding; SMART: Elongator protein 3/MiaB/NifB. (476 aa)    
Predicted Functional Partners:
ADZ10069.1
Radical SAM domain protein; KEGG: msi:Msm_0385 anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase elongator protein; PFAM: Radical SAM; Cobalamin (vitamin B12)-binding; SMART: Elongator protein 3/MiaB/NifB.
  
  
 
0.908
ADZ08816.1
Radical SAM domain protein; KEGG: msi:Msm_0385 anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase elongator protein; PFAM: Radical SAM; Cobalamin (vitamin B12)-binding; SMART: Elongator protein 3/MiaB/NifB.
  
  
 
0.907
ADZ08389.1
Transcriptional regulator, ArsR family; KEGG: mpd:MCP_0329 putative transcriptional regulator; PFAM: 4-vinyl reductase, 4VR; HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR.
  
  
 0.605
ADZ09240.1
Transcriptional regulator, ArsR family; KEGG: mpd:MCP_0329 putative transcriptional regulator; PFAM: 4-vinyl reductase, 4VR; HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR.
  
  
 0.605
ADZ09267.1
Transcriptional regulator, ArsR family; KEGG: mmg:MTBMA_c17390 transcriptional regulator; PFAM: 4-vinyl reductase, 4VR; HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR.
  
  
 0.605
ADZ10356.1
Transcriptional regulator, ArsR family; KEGG: mpd:MCP_0329 putative transcriptional regulator; PFAM: 4-vinyl reductase, 4VR; HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR.
  
  
 0.605
ADZ08645.1
PFAM: 4-vinyl reductase, 4VR; KEGG: mmg:MTBMA_c12390 hypothetical protein.
  
  
 0.583
ADZ09301.1
KEGG: mfv:Mfer_1029 radical sam domain protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB.
 
  
 0.579
ADZ10579.1
Geranylgeranyl reductase; KEGG: mth:MTH725 hypothetical protein; TIGRFAM: Geranylgeranyl reductase, plant/prokaryotic; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
  
 0.434
ADZ09910.1
Geranylgeranylglycerol-phosphate geranylgeranyltransferase; KEGG: rci:LRC477 prenyltransferase; PFAM: UbiA prenyltransferase.
 
  
 0.431
Your Current Organism:
Methanobacterium lacus
NCBI taxonomy Id: 877455
Other names: DSM 24406, JCM 17760, M. lacus, Methanobacterium lacus Borrel et al. 2012, Methanobacterium sp. 17A1, Methanobacterium sp. AL-21, strain 17A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.