STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ10258.1PUA domain containing protein; KEGG: mst:Msp_1063 RNA-binding protein; PFAM: Pseudouridine synthase/archaeosine transglycosylase; SMART: Pseudouridine synthase/archaeosine transglycosylase. (304 aa)    
Predicted Functional Partners:
ADZ08756.1
TIGRFAM: Conserved hypothetical protein CHP01210; PFAM: Radical SAM; KEGG: mmg:MTBMA_c03260 Fe-S oxidoreductase; SMART: Elongator protein 3/MiaB/NifB.
 
     0.771
tgtA
7-cyano-7-deazaguanine tRNA-ribosyltransferase; Exchanges the guanine residue with 7-cyano-7-deazaguanine (preQ0) at position 15 in the dihydrouridine loop (D-loop) of archaeal tRNAs; Belongs to the archaeosine tRNA-ribosyltransferase family.
 
  
0.764
rpl40e
HAMAP: 50S ribosomal protein L40e; KEGG: mmg:MTBMA_c09420 50S ribosomal protein L40E; Belongs to the eukaryotic ribosomal protein eL40 family.
  
     0.721
ADZ09264.1
UPF0179 protein; KEGG: mmg:MTBMA_c09890 hypothetical protein; HAMAP: Uncharacterised protein family UPF0179; PFAM: Uncharacterised protein family UPF0179; Belongs to the UPF0179 family.
  
     0.704
ADZ08779.1
NMD3 family protein; PFAM: NMD3; KEGG: mmg:MTBMA_c03450 NMD3-related protein.
  
     0.695
ADZ08950.1
PFAM: Queuine/other tRNA-ribosyltransferase; KEGG: mru:mru_0814 archaeosine tRNA-ribosyltransferase TgtA1.
     0.687
ADZ10259.1
PFAM: Domain of unknown function DUF59; KEGG: mmg:MTBMA_c02430 hypothetical protein.
       0.678
ADZ08463.1
TIGRFAM: Conserved hypothetical protein CHP00062; KEGG: mmg:MTBMA_c16920 hypothetical protein.
  
     0.637
ADZ10268.1
KEGG: mmg:MTBMA_c02330 regulatory protein.
 
     0.637
ADZ10163.1
KEGG: mst:Msp_0375 hypothetical protein.
  
     0.625
Your Current Organism:
Methanobacterium lacus
NCBI taxonomy Id: 877455
Other names: DSM 24406, JCM 17760, M. lacus, Methanobacterium lacus Borrel et al. 2012, Methanobacterium sp. 17A1, Methanobacterium sp. AL-21, strain 17A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.