Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ADZ10306.1KEGG: pjd:Pjdr2_6008 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core. (559 aa)    
Predicted Functional Partners:
ADZ10307.1
Regulatory protein MarR; KEGG: ppy:PPE_01803 transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR.
 
   
 0.614
ADZ10305.1
UPF0235 protein yggU; TIGRFAM: Conserved hypothetical protein CHP00251; HAMAP: Protein of unknown function DUF167; KEGG: mmg:MTBMA_c10190 hypothetical protein; PFAM: Protein of unknown function DUF167; Belongs to the UPF0235 family.
       0.486
ADZ10158.1
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mpl:Mpal_1261 glyoxalase/bleomycin resistance protein/dioxygenase.
 
   
 0.450
Your Current Organism:
Methanobacterium lacus
NCBI taxonomy Id: 877455
Other names: DSM 24406, JCM 17760, M. lacus, Methanobacterium lacus Borrel et al. 2012, Methanobacterium sp. 17A1, Methanobacterium sp. AL-21, strain 17A1
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