Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADZ10451.1KEGG: ttm:Tthe_0171 hypothetical protein. (225 aa)    
Predicted Functional Partners:
ADZ10450.1
KEGG: ttm:Tthe_0170 hypothetical protein.
 
     0.934
ADZ10449.1
PFAM: TfuA-like, core; KEGG: mmg:MTBMA_c13720 hypothetical protein.
       0.447
ADZ10149.1
PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: gym:GYMC10_0929 GCN5-related N-acetyltransferase.
  
     0.401
Your Current Organism:
Methanobacterium lacus
NCBI taxonomy Id: 877455
Other names: DSM 24406, JCM 17760, M. lacus, Methanobacterium lacus Borrel et al. 2012, Methanobacterium sp. 17A1, Methanobacterium sp. AL-21, strain 17A1
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