STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ10544.1HAMAP: Uncharacterised protein family UPF0292; PFAM: Toprim domain; KEGG: mth:MTH890 hypothetical protein; SMART: Toprim domain. (146 aa)    
Predicted Functional Partners:
dnaG
UPF0095 protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome.
 
   
 0.828
ADZ10542.1
ATPase associated with various cellular activities AAA_5; KEGG: mth:MTH892 ATP-dependent protease La related protein; PFAM: ATPase, AAA-5; SMART: ATPase, AAA+ type, core.
 
     0.756
rsmA
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily.
 
  
 0.667
ADZ10305.1
UPF0235 protein yggU; TIGRFAM: Conserved hypothetical protein CHP00251; HAMAP: Protein of unknown function DUF167; KEGG: mmg:MTBMA_c10190 hypothetical protein; PFAM: Protein of unknown function DUF167; Belongs to the UPF0235 family.
 
     0.572
ADZ09271.1
KEGG: msi:Msm_0519 hypothetical protein.
  
     0.536
ADZ08885.1
PFAM: Glutamate synthase, alpha subunit, C-terminal; KEGG: mfv:Mfer_0106 glutamate synthase alpha subunit domain protein.
  
     0.518
ADZ09599.1
KEGG: mmg:MTBMA_c09620 hypothetical protein.
  
     0.515
ADZ08694.1
Protein of unknown function DUF61; PFAM: Uncharacterised protein family UPF0216; KEGG: mth:MTH949 hypothetical protein; Belongs to the UPF0216 family.
  
     0.514
ADZ10452.1
Metal dependent phosphohydrolase; TIGRFAM: HD-related protein; Uncharacterised protein family HDIG; PFAM: Metal-dependent phosphohydrolase, HD subdomain; KEGG: mru:mru_0474 HD domain-containing protein; SMART: Metal-dependent phosphohydrolase, HD domain.
 
   
 0.501
ADZ10082.1
PFAM: Protein of unknown function DUF166; KEGG: mth:MTH1356 hypothetical protein.
  
     0.495
Your Current Organism:
Methanobacterium lacus
NCBI taxonomy Id: 877455
Other names: DSM 24406, JCM 17760, M. lacus, Methanobacterium lacus Borrel et al. 2012, Methanobacterium sp. 17A1, Methanobacterium sp. AL-21, strain 17A1
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