STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ10563.1Conserved hypothetical protein CHP00300; KEGG: mmg:MTBMA_c12620 lysine-oxoglutarate reductase/saccharopine dehydrogenase; TIGRFAM: Conserved hypothetical protein CHP00300; PFAM: LOR/SDH bifunctional enzyme, conserved domain. (407 aa)    
Predicted Functional Partners:
ade
Adenine deaminase; PFAM: Amidohydrolase 1; TIGRFAM: Adenine deaminase; HAMAP: Adenine deaminase; KEGG: mmg:MTBMA_c12610 adenine deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family.
       0.691
ADZ10562.1
Agmatinase; TIGRFAM: Putative agmatinase; KEGG: mth:MTH868 agmatine ureohydrolase; PFAM: Ureohydrolase; Belongs to the arginase family.
     
 0.590
ADZ08533.1
PFAM: Amino acid-binding ACT; KEGG: mmg:MTBMA_c16230 energy-converting hydrogenase B, subunit Q.
  
     0.494
eif5a
Translation initiation factor 5A; Functions by promoting the formation of the first peptide bond; Belongs to the eIF-5A family.
       0.406
Your Current Organism:
Methanobacterium lacus
NCBI taxonomy Id: 877455
Other names: DSM 24406, JCM 17760, M. lacus, Methanobacterium lacus Borrel et al. 2012, Methanobacterium sp. 17A1, Methanobacterium sp. AL-21, strain 17A1
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.