STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMC1Transmembrane channel like 1. (788 aa)    
Predicted Functional Partners:
CIB2
Calcium and integrin binding family member 2.
    
 0.932
CIB3
Calcium and integrin binding family member 3.
    
 0.858
LHFPL5
LHFPL tetraspan subfamily member 5.
   
 
 0.715
MYSM1
Myb like, SWIRM and MPN domains 1.
    
 0.690
ARID4B
AT-rich interaction domain 4B.
    
 0.654
ARID4A
AT-rich interaction domain 4A.
    
 0.654
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
  0.621
PTK7
Protein tyrosine kinase 7 (inactive).
    
  0.586
MST1R
Macrophage stimulating 1 receptor.
    
  0.556
MET
MET proto-oncogene, receptor tyrosine kinase.
    
  0.556
Your Current Organism:
Dromaius novaehollandiae
NCBI taxonomy Id: 8790
Other names: D. novaehollandiae, Dromaius novae-hollandiae, emu
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