RANBP3 protein (Dromaius novaehollandiae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RANBP3

RAN binding protein 3. (623 aa)

Predicted Functional Partners:

RCC1

0.866

KPNA4

0.864

XPO1

0.816

NUP214

0.811

NUP50

0.732

RAE1

0.704

ENSDNVP00000020317

0.692

ENSDNVP00000020325

0.692

EXOSC10

0.691

NXT2

0.687

Your Current Organism:

Dromaius novaehollandiae

NCBI taxonomy Id: 8790
Other names: D. novaehollandiae, Dromaius novae-hollandiae, emu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSDNVP00000020317	ENSDNVP00000020325	ENSDNVP00000020317	ENSDNVP00000020325	annotation not available	annotation not available	0.900
ENSDNVP00000020317	KPNA4	ENSDNVP00000020317	ENSDNVP00000012840	annotation not available	Karyopherin subunit alpha 4.	0.693
ENSDNVP00000020317	NUP214	ENSDNVP00000020317	ENSDNVP00000013100	annotation not available	Nucleoporin 214.	0.418
ENSDNVP00000020317	NUP50	ENSDNVP00000020317	ENSDNVP00000001915	annotation not available	Nucleoporin 50.	0.423
ENSDNVP00000020317	RANBP3	ENSDNVP00000020317	ENSDNVP00000007033	annotation not available	RAN binding protein 3.	0.692
ENSDNVP00000020317	XPO1	ENSDNVP00000020317	ENSDNVP00000020437	annotation not available	Exportin 1.	0.732
ENSDNVP00000020325	ENSDNVP00000020317	ENSDNVP00000020325	ENSDNVP00000020317	annotation not available	annotation not available	0.900
ENSDNVP00000020325	KPNA4	ENSDNVP00000020325	ENSDNVP00000012840	annotation not available	Karyopherin subunit alpha 4.	0.693
ENSDNVP00000020325	NUP214	ENSDNVP00000020325	ENSDNVP00000013100	annotation not available	Nucleoporin 214.	0.418
ENSDNVP00000020325	NUP50	ENSDNVP00000020325	ENSDNVP00000001915	annotation not available	Nucleoporin 50.	0.423
ENSDNVP00000020325	RANBP3	ENSDNVP00000020325	ENSDNVP00000007033	annotation not available	RAN binding protein 3.	0.692
ENSDNVP00000020325	XPO1	ENSDNVP00000020325	ENSDNVP00000020437	annotation not available	Exportin 1.	0.732
EXOSC10	KPNA4	ENSDNVP00000025200	ENSDNVP00000012840	Exosome component 10.	Karyopherin subunit alpha 4.	0.714
EXOSC10	RAE1	ENSDNVP00000025200	ENSDNVP00000014209	Exosome component 10.	Ribonucleic acid export 1.	0.419
EXOSC10	RANBP3	ENSDNVP00000025200	ENSDNVP00000007033	Exosome component 10.	RAN binding protein 3.	0.691
KPNA4	ENSDNVP00000020317	ENSDNVP00000012840	ENSDNVP00000020317	Karyopherin subunit alpha 4.	annotation not available	0.693
KPNA4	ENSDNVP00000020325	ENSDNVP00000012840	ENSDNVP00000020325	Karyopherin subunit alpha 4.	annotation not available	0.693
KPNA4	EXOSC10	ENSDNVP00000012840	ENSDNVP00000025200	Karyopherin subunit alpha 4.	Exosome component 10.	0.714
KPNA4	NUP50	ENSDNVP00000012840	ENSDNVP00000001915	Karyopherin subunit alpha 4.	Nucleoporin 50.	0.692
KPNA4	RANBP3	ENSDNVP00000012840	ENSDNVP00000007033	Karyopherin subunit alpha 4.	RAN binding protein 3.	0.864