STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112996124E3 ubiquitin-protein ligase TRIM39-like. (258 aa)    
Predicted Functional Partners:
DDX58
DExD/H-box helicase 58.
    
 0.601
ICOS
Inducible T cell costimulator.
    
 0.592
RPS27A
Ribosomal protein S27a.
    
  0.584
ZFAND4
Zinc finger AN1-type containing 4.
    
 0.547
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.530
ANKFY1
Ankyrin repeat and FYVE domain containing 1.
    
  0.528
FAU
FAU ubiquitin like and ribosomal protein S30 fusion.
    
 0.513
OASL
2'-5'-oligoadenylate synthase 1-like.
    
 0.505
KDM2B
Lysine demethylase 2B.
    
  0.505
ENSDNVP00000024314
annotation not available
    
 0.505
Your Current Organism:
Dromaius novaehollandiae
NCBI taxonomy Id: 8790
Other names: D. novaehollandiae, Dromaius novae-hollandiae, emu
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