STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS13BVacuolar protein sorting-associated protein 13B-like. (2512 aa)    
Predicted Functional Partners:
GAK
Cyclin G associated kinase.
    
 
 0.657
DNAJC6
DnaJ heat shock protein family (Hsp40) member C6.
    
 
 0.601
VPS35
VPS35 retromer complex component.
   
 
 0.555
ZNF462
Zinc finger protein 462.
      
 0.526
PGK1
Phosphoglycerate kinase 1.
      
 0.521
VPS45
Vacuolar protein sorting 45 homolog.
    
 
 0.470
BIRC6
Baculoviral IAP repeat containing 6.
   
 
 0.449
VPS13D
Vacuolar protein sorting 13 homolog D.
   
  
0.446
CSDC2
Cold shock domain containing C2.
    
 
 0.441
YBX3
Y-box binding protein 3.
    
 
 0.441
Your Current Organism:
Dromaius novaehollandiae
NCBI taxonomy Id: 8790
Other names: D. novaehollandiae, Dromaius novae-hollandiae, emu
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.