STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCUBE3Signal peptide, CUB and EGF-like domain-containing protein 3. (934 aa)    
Predicted Functional Partners:
ARID4B
AT-rich interaction domain 4B.
    
 0.758
MYSM1
Myb like, SWIRM and MPN domains 1.
    
 0.690
ARID4A
AT-rich interaction domain 4A.
    
 0.654
MMP9
Matrix metallopeptidase 9.
   
 0.645
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
  0.621
ENSDNVP00000001080
annotation not available
   
 0.603
ENSDNVP00000001110
annotation not available
   
 0.603
PTK7
Protein tyrosine kinase 7 (inactive).
    
  0.586
RBPJL
Recombination signal binding protein for immunoglobulin kappa J region like.
    
 0.559
RBPJ
Recombination signal binding protein for immunoglobulin kappa J region.
    
 0.559
Your Current Organism:
Dromaius novaehollandiae
NCBI taxonomy Id: 8790
Other names: D. novaehollandiae, Dromaius novae-hollandiae, emu
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