STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DEGS1Delta 4-desaturase, sphingolipid 1. (323 aa)    
Predicted Functional Partners:
SPHK1
Sphingosine kinase 1.
    
 0.903
UGCG
UDP-glucose ceramide glucosyltransferase.
   
 
 0.902
METAP2
Methionyl aminopeptidase 2.
 
    
 0.896
SMPD2
Sphingomyelin phosphodiesterase 2.
     
 0.892
KDSR
3-ketodihydrosphingosine reductase.
   
 
 0.890
CERS3
Ceramide synthase 3.
   
 0.873
CERK
Ceramide kinase.
    
 0.873
SGPP1
Sphingosine-1-phosphate phosphatase 1.
     
 0.873
ASAH1
N-acylsphingosine amidohydrolase 1.
     
 0.871
SGMS2
Sphingomyelin synthase 2.
   
 
 0.869
Your Current Organism:
Dromaius novaehollandiae
NCBI taxonomy Id: 8790
Other names: D. novaehollandiae, Dromaius novae-hollandiae, emu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.