STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIM64452.1PFAM: Pilus assembly protein, PilO. (223 aa)    
Predicted Functional Partners:
EIM64451.1
PFAM: Fimbrial assembly protein (PilN).
 
 
 0.998
EIM64453.1
PFAM: Pilus assembly protein, PilP.
 
 
 0.995
EIM64450.1
PFAM: Competence protein A; TIGRFAM: type IV pilus assembly protein PilM.
 
 
 0.994
EIM64454.1
Type IV pilus secretin PilQ/competence protein; PFAM: Bacterial type II/III secretion system short domain; Secretin and TonB N terminus short domain; Bacterial type II and III secretion system protein; TIGRFAM: type IV pilus secretin (or competence protein) PilQ.
 
 
 0.990
EIM63084.1
PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
 
   
 0.813
EIM64244.1
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 
 0.786
EIM64241.1
General secretion pathway protein L (GspL); PFAM: Fimbrial assembly protein (PilN).
  
 
 0.752
EIM64180.1
Type II secretory pathway, component PulF; PFAM: Bacterial type II secretion system protein F domain.
 
 
 
 0.751
EIM64028.1
Type IV-A pilus assembly ATPase PilB; PFAM: GSPII_E N-terminal domain; Type II/IV secretion system protein; Cyclic nucleotide-binding domain; TIGRFAM: type IV-A pilus assembly ATPase PilB.
  
 
 0.636
EIM62996.1
PFAM: Bacterial type II secretion system protein F domain; TIGRFAM: general secretion pathway protein F.
   
 
 0.631
Your Current Organism:
Desulfobacter postgatei
NCBI taxonomy Id: 879212
Other names: D. postgatei 2ac9, Desulfobacter postgatei 2ac9, Desulfobacter postgatei DSM 2034, Desulfobacter postgatei str. 2ac9, Desulfobacter postgatei strain 2ac9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.