STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEE12005.1Bile acid:sodium symporter; COGs: COG0385 Na+-dependent transporter; InterPro IPR002657; KEGG: pgn:PGN_0383 probable transporter; PFAM: Bile acid:sodium symporter; SPTR: Sodium bile acid symporter family protein; IMG reference gene:2504823924; PFAM: Sodium Bile acid symporter family. (327 aa)    
Predicted Functional Partners:
AEE12003.1
Radical SAM domain protein; COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197; KEGG: pdi:BDI_2426 putative heme biosynthesis protein; PFAM: Radical SAM; SPTR: Radical SAM domain protein; IMG reference gene:2504823922; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM additional 4Fe4S-binding domain.
 
     0.811
AEE12004.1
Domain of unknown function DUF1730; COGs: COG1600 Uncharacterized Fe-S protein; InterPro IPR013542:IPR001450; KEGG: pgn:PGN_1497 putative iron-sulfur cluster binding protein; PFAM: Domain of unknown function DUF1730; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SPTR: Putative iron-sulfur cluster-binding protein; IMG reference gene:2504823923; PFAM: Domain of unknown function (DUF1730); TIGRFAM: iron-sulfur cluster binding protein, putative.
       0.778
AEE12006.1
KEGG: str:Sterm_2254 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504823925.
       0.746
AEE12007.1
Hypothetical protein; KEGG: pfd:PFDG_03384 conserved hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504823926.
       0.721
AEE13416.1
KEGG: pgn:PGN_0197 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504825406.
  
     0.718
AEE12002.1
SPTR: Putative lipoprotein; IMG reference gene:2504823921.
       0.701
AEE12486.1
KEGG: pgn:PGN_1599 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504824416.
  
     0.674
AEE12698.1
Hypothetical protein; KEGG: pgn:PGN_1645 putative dipeptidyl-peptidase III; SPTR: Putative uncharacterized protein; IMG reference gene:2504824653.
  
     0.669
AEE13104.1
KEGG: pgn:PGN_0297 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504825078.
  
     0.651
AEE13059.1
KEGG: pgn:PGN_0262 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504825033.
  
     0.649
Your Current Organism:
Porphyromonas asaccharolytica
NCBI taxonomy Id: 879243
Other names: P. asaccharolytica DSM 20707, Porphyromonas asaccharolytica ATCC 25260, Porphyromonas asaccharolytica CCUG 7834, Porphyromonas asaccharolytica DSM 20707, Porphyromonas asaccharolytica JCM 6326, Porphyromonas asaccharolytica str. DSM 20707, Porphyromonas asaccharolytica strain DSM 20707
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.