STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEE12251.1ErfK/YbiS/YcfS/YnhG family protein; InterPro IPR005490; KEGG: pdi:BDI_0343 hypothetical protein; PFAM: YkuD domain; SPTR: Putative lipoprotein; IMG reference gene:2504824176; PFAM: L,D-transpeptidase catalytic domain. (338 aa)    
Predicted Functional Partners:
AEE12250.1
Uncharacterized protein family UPF0126; COGs: COG2860 membrane protein; InterPro IPR005115; KEGG: pdi:BDI_1706 putative transmembrane protein; PFAM: Uncharacterised protein family UPF0126; SPTR: Putative membrane protein; IMG reference gene:2504824175; PFAM: UPF0126 domain.
       0.752
AEE12243.1
KEGG: pgn:PGN_0178 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504824168; PFAM: Protein of unknown function (DUF3575).
 
     0.726
AEE12015.1
KEGG: pgi:PG0698 putative lipoprotein; SPTR: Putative uncharacterized protein; IMG reference gene:2504823934.
  
    0.724
AEE12242.1
InterPro IPR001440:IPR019734; KEGG: bfs:BF2183 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: Tetratricopeptide repeat protein; IMG reference gene:2504824167; PFAM: Tetratricopeptide repeat; OmpA family.
 
     0.704
AEE12113.1
KEGG: pgn:PGN_0129 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504824037; PFAM: Protein of unknown function (DUF3575).
  
     0.686
udk
COGs: COG0572 Uridine kinase; HAMAP: Uridine kinase; InterPro IPR006083:IPR000764; KEGG: pgn:PGN_1722 uridine kinase; PFAM: Phosphoribulokinase/uridine kinase; PRIAM: Uridine kinase; SPTR: Uridine kinase; TIGRFAM: Uridine kinase; IMG reference gene:2504824174; PFAM: Phosphoribulokinase / Uridine kinase family; TIGRFAM: uridine kinase.
       0.685
AEE12800.1
KEGG: pgi:PG2130 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504824761; PFAM: Protein of unknown function (DUF3575).
  
     0.646
AEE12248.1
COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: pgn:PGN_0361 putative glycosyl transferase family 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyltransferase, group 2 family protein; IMG reference gene:2504824173; PFAM: Glycosyl transferase family 2.
       0.630
tyrS
Tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.
       0.613
AEE13556.1
OmpA/MotB domain protein; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: pgn:PGN_0728 outer membrane protein 40 precursor; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: Outer membrane protein 40; IMG reference gene:2504825552; PFAM: OmpA family.
  
     0.597
Your Current Organism:
Porphyromonas asaccharolytica
NCBI taxonomy Id: 879243
Other names: P. asaccharolytica DSM 20707, Porphyromonas asaccharolytica ATCC 25260, Porphyromonas asaccharolytica CCUG 7834, Porphyromonas asaccharolytica DSM 20707, Porphyromonas asaccharolytica JCM 6326, Porphyromonas asaccharolytica str. DSM 20707, Porphyromonas asaccharolytica strain DSM 20707
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