STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEE12344.1Protein of unknown function UPF0118; COGs: COG0628 permease; InterPro IPR002549; KEGG: bfr:BF1591 hypothetical protein; PFAM: Uncharacterised protein family UPF0118; SPTR: Putative membrane protein; IMG reference gene:2504824271; PFAM: Domain of unknown function DUF20. (429 aa)    
Predicted Functional Partners:
dnaX
DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
       0.781
AEE12251.1
ErfK/YbiS/YcfS/YnhG family protein; InterPro IPR005490; KEGG: pdi:BDI_0343 hypothetical protein; PFAM: YkuD domain; SPTR: Putative lipoprotein; IMG reference gene:2504824176; PFAM: L,D-transpeptidase catalytic domain.
  
  
 0.551
AEE12734.1
Polysaccharide export protein; COGs: COG1596 Periplasmic protein involved in polysaccharide export; InterPro IPR003715:IPR019554; KEGG: pgn:PGN_1523 putative polysaccharide export outer membrane protein; PFAM: Polysaccharide export protein; Soluble ligand binding domain; SPTR: Polysaccharide biosynthesis/export protein; IMG reference gene:2504824693; PFAM: Polysaccharide biosynthesis/export protein; SLBB domain.
  
     0.476
secF
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
       0.439
AEE12744.1
Fmu (Sun) domain protein; COGs: COG0144 tRNA and rRNA cytosine-C5-methylase; InterPro IPR001678; KEGG: bvu:BVU_1954 tRNA and rRNA cytosine-C5-methylase; PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; SPTR: NOL1/NOP2/sun family protein; IMG reference gene:2504824703; PFAM: NOL1/NOP2/sun family.
     
 0.424
Your Current Organism:
Porphyromonas asaccharolytica
NCBI taxonomy Id: 879243
Other names: P. asaccharolytica DSM 20707, Porphyromonas asaccharolytica ATCC 25260, Porphyromonas asaccharolytica CCUG 7834, Porphyromonas asaccharolytica DSM 20707, Porphyromonas asaccharolytica JCM 6326, Porphyromonas asaccharolytica str. DSM 20707, Porphyromonas asaccharolytica strain DSM 20707
Server load: medium (70%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.