STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEE13059.1KEGG: pgn:PGN_0262 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504825033. (431 aa)    
Predicted Functional Partners:
rimO
Ribosomal protein S12 methylthiotransferase rimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
   
   0.836
ftsY
Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).
     
 0.794
AEE13556.1
OmpA/MotB domain protein; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: pgn:PGN_0728 outer membrane protein 40 precursor; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: Outer membrane protein 40; IMG reference gene:2504825552; PFAM: OmpA family.
  
   0.783
AEE12759.1
KEGG: pgi:PG1835 putative lipoprotein; SPTR: Putative lipoprotein; IMG reference gene:2504824719.
  
     0.773
AEE13104.1
KEGG: pgn:PGN_0297 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504825078.
  
    0.769
AEE13526.1
PDZ/DHR/GLGF domain protein; InterPro IPR001478; KEGG: pgi:PG1726 PDZ domain-containing protein; PFAM: PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF; SPTR: PDZ/DHR/GLGF domain protein; IMG reference gene:2504825522; PFAM: PDZ domain (Also known as DHR or GLGF).
  
     0.769
AEE13148.1
Sporulation domain-containing protein; InterPro IPR007730; KEGG: pgi:PG1341 hypothetical protein; PFAM: Sporulation/cell division region, bacteria; SPTR: Sporulation and cell division repeat protein; IMG reference gene:2504825124; PFAM: Sporulation related domain.
  
   
 0.768
AEE13406.1
KEGG: pdi:BDI_1698 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504825396.
  
     0.767
AEE13387.1
COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016; KEGG: pgn:PGN_0348 putative universal stress protein UspA; PFAM: UspA; SPTR: Universal stress family protein; IMG reference gene:2504825376; PFAM: Universal stress protein family.
  
     0.765
AEE13416.1
KEGG: pgn:PGN_0197 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504825406.
  
    0.765
Your Current Organism:
Porphyromonas asaccharolytica
NCBI taxonomy Id: 879243
Other names: P. asaccharolytica DSM 20707, Porphyromonas asaccharolytica ATCC 25260, Porphyromonas asaccharolytica CCUG 7834, Porphyromonas asaccharolytica DSM 20707, Porphyromonas asaccharolytica JCM 6326, Porphyromonas asaccharolytica str. DSM 20707, Porphyromonas asaccharolytica strain DSM 20707
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