STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEE13067.1Rubredoxin-type Fe(Cys)4 protein; COGs: COG1773 Rubredoxin; InterPro IPR004039; KEGG: cac:CA_C2778 rubredoxin; PFAM: Rubredoxin-type Fe(Cys)4 protein; SPTR: Rubredoxin; IMG reference gene:2504825041; PFAM: Rubredoxin. (54 aa)    
Predicted Functional Partners:
AEE12812.1
COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterProIPR011895:IPR002880:IPR019752:IPR019456:IPR 001450:IPR011766; KEGG: pgn:PGN_1418 pyruvate-flavodoxin oxidoreductase; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; Pyruvate/ketoisovalerate oxidoreductase; Pyruvate-flavodoxin oxidoreductase, EKR domain; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; PRIAM: Pyruvate dehydrogenase (NADP(+)); SPTR: Pyruvate synthase; TIGRFAM: Pyruvate-flavodoxin [...]
     
 0.788
AEE13066.1
InterPro IPR007341; KEGG: pdi:BDI_0929 hypothetical protein; PFAM: Transglycosylase-associated protein; SPTR: Transglycosylase associated protein; IMG reference gene:2504825040; PFAM: Transglycosylase associated protein.
       0.689
AEE13142.1
Flavodoxin/nitric oxide synthase; COGs: COG0426 flavoprotein; InterPro IPR008254; KEGG: pgi:PG0804 flavodoxin; PFAM: Flavodoxin/nitric oxide synthase; SPTR: Metallo-beta-lactamase domain protein; IMG reference gene:2504825118; PFAM: Flavodoxin; Metallo-beta-lactamase superfamily.
 
  
 0.664
AEE12619.1
Rubrerythrin; COGs: COG1592 Rubrerythrin; InterPro IPR003251; KEGG: pdi:BDI_3032 rubrerythrin; PFAM: Rubrerythrin; SPTR: Rubrerythrin; IMG reference gene:2504824563; PFAM: Rubrerythrin.
  
  
 0.614
AEE12979.1
Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
  
 0.581
AEE13486.1
Ferritin Dps family protein; Iron-storage protein.
  
  
 0.539
AEE12192.1
InterPro IPR000866; KEGG: pgi:PG2175 hypothetical protein; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Antioxidant, AhpC/TSA family; IMG reference gene:2504824116; PFAM: AhpC/TSA family.
  
  
 0.535
thiE
Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.
  
    0.533
AEE12897.1
UbiA prenyltransferase; COGs: COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferase; InterPro IPR000537; KEGG: pru:PRU_1405 prenyltransferase, UbiA family; PFAM: UbiA prenyltransferase; SPTR: Phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase family protein; IMG reference gene:2504824860; PFAM: UbiA prenyltransferase family; Belongs to the UbiA prenyltransferase family.
     
 0.510
msrB
Peptide methionine sulfoxide reductase msrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
  
 0.478
Your Current Organism:
Porphyromonas asaccharolytica
NCBI taxonomy Id: 879243
Other names: P. asaccharolytica DSM 20707, Porphyromonas asaccharolytica ATCC 25260, Porphyromonas asaccharolytica CCUG 7834, Porphyromonas asaccharolytica DSM 20707, Porphyromonas asaccharolytica JCM 6326, Porphyromonas asaccharolytica str. DSM 20707, Porphyromonas asaccharolytica strain DSM 20707
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