STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEE13347.1Hypothetical protein; InterPro IPR019734; KEGG: pdi:BDI_3175 hypothetical protein; SPTR: Tetratricopeptide repeat protein; IMG reference gene:2504825335. (587 aa)    
Predicted Functional Partners:
dut
Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.
  
    0.870
ispG
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.
 
     0.838
AEE13348.1
SPTR: Putative lipoprotein; IMG reference gene:2504825336.
  
  
 0.819
AEE13349.1
Peptidase M23; COGs: COG4942 Membrane-bound metallopeptidase; InterPro IPR016047; KEGG: pgi:PG0956 M24/M37 family peptidase putative; PFAM: Peptidase M23; SPTR: Peptidase, M23 family; IMG reference gene:2504825337; PFAM: Peptidase family M23.
  
    0.760
AEE12008.1
InterPro IPR001440:IPR019734; KEGG: pru:PRU_2004 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: Tetratricopeptide repeat protein; IMG reference gene:2504823927; PFAM: Tetratricopeptide repeat.
  
 
 0.723
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.710
AEE13350.1
Riboflavin biosynthesis protein RibF; COGs: COG0196 FAD synthase; InterPro IPR004821:IPR002606:IPR015864:IPR015865; KEGG: coc:Coch_1375 riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; PRIAM: FAD synthetase., Riboflavin kinase; SPTR: Riboflavin biosynthesis protein RibF; TIGRFAM: Riboflavin kinase/FAD synthetase; Cytidyltransferase-related; IMG reference gene:2504825338; PFAM: Riboflavin kinase; FAD synthetase; TIGRFAM: riboflavin kinase/FMN adenylyltransferase; Belongs to the ribF family.
       0.682
AEE12867.1
InterPro IPR019734:IPR013105; KEGG: pgn:PGN_1323 TPR domain protein; PFAM: Tetratricopeptide TPR2; SMART: Tetratricopeptide repeat; SPTR: Tetratricopeptide repeat protein; IMG reference gene:2504824830; PFAM: Tetratricopeptide repeat.
 
 
 
 0.632
AEE12672.1
Tetratricopeptide TPR_2 repeat-containing protein; InterPro IPR019734:IPR001440:IPR013105; KEGG: pgi:PG2200 TPR domain-containing protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SPTR: Tetratricopeptide repeat protein; IMG reference gene:2504824621; PFAM: Tetratricopeptide repeat.
 
 
 0.629
secF
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
  
 0.623
Your Current Organism:
Porphyromonas asaccharolytica
NCBI taxonomy Id: 879243
Other names: P. asaccharolytica DSM 20707, Porphyromonas asaccharolytica ATCC 25260, Porphyromonas asaccharolytica CCUG 7834, Porphyromonas asaccharolytica DSM 20707, Porphyromonas asaccharolytica JCM 6326, Porphyromonas asaccharolytica str. DSM 20707, Porphyromonas asaccharolytica strain DSM 20707
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